Commits · b52c5b75e6ec857cb01e44f8d78b0fe35512b8c8 · UMR-ASTRE / insect-infection-rates · GitLab

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May 24, 2024
- Abundance data for Mondrian matrix. · b52c5b75
  Facundo Muñoz authored 9 months ago
  
  Sent by Yannick Grimaud 2023-10-25.
  b52c5b75
Oct 20, 2023
- Project notes. Refer to LogSeq. · 5498dbdb
  Facundo Muñoz authored 1 year ago
  
  5498dbdb
- Update compiled reports. · 775c7ac7
  Facundo Muñoz authored 1 year ago
  
  775c7ac7
- Presentation of results for discussion. · 9a451ab8
  Facundo Muñoz authored 1 year ago
  
  9a451ab8
- Targets: extract selected results and figures. · a67eda67
  Facundo Muñoz authored 1 year ago
  
  a67eda67
Sep 28, 2023
- Update Readme. · dbe87bc2
  Facundo Muñoz authored 1 year ago
  
  dbe87bc2
- Chage target name results. · 1c0459cb
  Facundo Muñoz authored 1 year ago
  
  1c0459cb
- Update compiled reports. · 261a3203
  Facundo Muñoz authored 1 year ago
  
  261a3203
- Final model report. · 77f39e76
  Facundo Muñoz authored 1 year ago
  
  77f39e76
- Technical report. Fix caption. · 5d98b886
  Facundo Muñoz authored 1 year ago
  
  5d98b886
- Final model. Stan code. · d056718e
  Facundo Muñoz authored 1 year ago
  
  d056718e
- Demo Farrington. Improve plot. · 21c233f0
  Facundo Muñoz authored 1 year ago
  
  21c233f0
- Final model. Increase number of chains and samples. · a7c62fc5
  Facundo Muñoz authored 1 year ago
  
  a7c62fc5
Sep 20, 2023
- Explore the identifiability issues with the seasonal model in model 8, leading to model 9. · 0f6ccdca
  Facundo Muñoz authored 1 year ago
  
  0f6ccdca
- Move seasons_fn() to global functions. · e9c1b01b
  Facundo Muñoz authored 1 year ago
  
  e9c1b01b
- Fit model 9, using season as a fixed effect. · 6e75ef1a
  Facundo Muñoz authored 1 year ago
  
  6e75ef1a
Sep 15, 2023
- Report. Fix bibliography. · 706c52fb
  Facundo Muñoz authored 1 year ago
  
  706c52fb
- Test script. Use of narrower priors as the number of covariates increase. · 54e2c92a
  Facundo Muñoz authored 1 year ago
  
  54e2c92a
- Test script: distribution of a normal variable with half-normal sd. · 555279e9
  Facundo Muñoz authored 1 year ago
  
  555279e9
- Priors for sd and sds effects in specific targets. Use cmdstanr backend. · 101f1039
  Facundo Muñoz authored 1 year ago
  
  101f1039
Aug 18, 2023
- Descriptive report. Minor aesthetic fixes. · 6762dc50
  Facundo Muñoz authored 1 year ago
  
  6762dc50
Mar 30, 2022
- Lint targets. · 91d57fb5
  Facundo Muñoz authored 2 years ago
  
  91d57fb5
Mar 04, 2022
- Targets: organise models in sub-sections. · d6a00dba
  Facundo Muñoz authored 3 years ago
  
  d6a00dba
Feb 18, 2022
- Update descriptive report. Figure trends of positive pools by virus. · 0c8a3ebd
  Facundo Muñoz authored 3 years ago
  
  0c8a3ebd
Feb 17, 2022
- Polled Bernoulli. Update compiled html report. · dce5da81
  Facundo Muñoz authored 3 years ago
  
  dce5da81
- Pooled Bernoulli: update priors used in the case studies. · 434e7aaf
  Facundo Muñoz authored 3 years ago
  
  434e7aaf
- Pooled Bernoulli. Add Section on using the clolog link with a Bernoulli likelihood. · 2c4c976a
  Facundo Muñoz authored 3 years ago
  
  2c4c976a
- Fit case studies with simulated data using the cloglog link with a Bernoulli likelihood. · 36907330
  Facundo Muñoz authored 3 years ago
  
  36907330
- Use the prior defined as a target in the case studies with simulated data. · 0ee6354e
  Facundo Muñoz authored 3 years ago
  
  0ee6354e
- Add bug-report in brms. · f489224e
  Facundo Muñoz authored 3 years ago
  
  Bernoully family with all observations at 1.
  f489224e
Feb 16, 2022
- Verify the brms outcome for the linear predictor when there is an offset. · bbbf380e
  Facundo Muñoz authored 3 years ago
  
  bbbf380e
Feb 15, 2022
- Add demo Farrington. · 9e83de5e
  Facundo Muñoz authored 3 years ago
  
  GLM with cloglog link.
  9e83de5e
Feb 08, 2022
- Update Readme and compiled html reports. · 490029a3
  Facundo Muñoz authored 3 years ago
  
  490029a3
- Update modelling report. · e0e22cb2
  Facundo Muñoz authored 3 years ago
  
  e0e22cb2
- Perform model comparison. · 3eaf241d
  Facundo Muñoz authored 3 years ago
  
  3eaf241d
- Use a less informative prior for the Global prevalence. · e6bbf8c4
  Facundo Muñoz authored 3 years ago
  
  e6bbf8c4
- Function to compute the marginal effect of the species for a fitted model. · 89c22f90
  Facundo Muñoz authored 3 years ago
  
  89c22f90
- Models 5, 6, 7: interaction between virus and species. · fc8a2b98
  Facundo Muñoz authored 3 years ago
  
  fc8a2b98
Jan 22, 2022
- Model 4: test classgeo_3 as a proxy of site. · 5de9e757
  Facundo Muñoz authored 3 years ago
  
  5de9e757
- Report: fix site names. · 4594dabd
  Facundo Muñoz authored 3 years ago
  
  I had simplified site names by removing the 974 prefix. Update report accordingly.
  4594dabd